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Research Article

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

  • Robin A. Ohm mail,

    raohm@lbl.gov (RAO); ivgrigoriev@lbl.gov (IVG)

    Affiliation: United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America

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  • Nicolas Feau,

    Affiliation: Faculty of Forestry, Forest Sciences Centre, University of British Columbia, Vancouver, British Columbia, Canada

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  • Bernard Henrissat,

    Affiliation: Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, CNRS, Marseille, France

    X
  • Conrad L. Schoch,

    Affiliation: NIH/NLM/NCBI, Bethesda, Maryland, United States of America

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  • Benjamin A. Horwitz,

    Affiliation: Department of Biology, Technion - IIT, Haifa, Israel

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  • Kerrie W. Barry,

    Affiliation: United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America

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  • Bradford J. Condon,

    Affiliation: Department of Plant Pathology & Plant-Microbe Biology, Cornell University, Ithaca, New York, United States of America

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  • Alex C. Copeland,

    Affiliation: United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America

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  • Braham Dhillon,

    Affiliation: Faculty of Forestry, Forest Sciences Centre, University of British Columbia, Vancouver, British Columbia, Canada

    X
  • Fabian Glaser,

    Affiliation: Bioinformatics Knowledge Unit, Technion - IIT, Haifa, Israel

    X
  • Cedar N. Hesse,

    Affiliation: Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America

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  • Idit Kosti,

    Affiliation: Department of Biology, Technion - IIT, Haifa, Israel

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  • Kurt LaButti,

    Affiliation: United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America

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  • Erika A. Lindquist,

    Affiliation: United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America

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  • Susan Lucas,

    Affiliation: United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America

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  • Asaf A. Salamov,

    Affiliation: United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America

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  • Rosie E. Bradshaw,

    Affiliation: Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand

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  • Lynda Ciuffetti,

    Affiliation: Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America

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  • Richard C. Hamelin,

    Affiliations: Faculty of Forestry, Forest Sciences Centre, University of British Columbia, Vancouver, British Columbia, Canada, Natural Resources Canada, Ste-Foy, Quebec, Canada

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  • Gert H. J. Kema,

    Affiliation: Plant Research International, Wageningen, The Netherlands

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  • Christopher Lawrence,

    Affiliation: Virginia Bioinformatics Institute & Department of Biological Sciences, Blacksburg, Virginia, United States of America

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  • James A. Scott,

    Affiliation: Division of Occupational & Environmental Health, Dalla Lana School of Public Health, University of Toronto, Toronto, Canada

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  • Joseph W. Spatafora,

    Affiliation: Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America

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  • B. Gillian Turgeon,

    Affiliation: Department of Plant Pathology & Plant-Microbe Biology, Cornell University, Ithaca, New York, United States of America

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  • Pierre J. G. M. de Wit,

    Affiliation: Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands

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  • Shaobin Zhong,

    Affiliation: Department of Plant Pathology, North Dakota State University, Fargo, North Dakota, United States of America

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  • Stephen B. Goodwin,

    Affiliation: United States Department of Agriculture, Agricultural Research Service, Purdue University, West Lafayette, Indiana, United States of America

    X
  • Igor V. Grigoriev mail

    raohm@lbl.gov (RAO); ivgrigoriev@lbl.gov (IVG)

    Affiliation: United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America

    X
  • Published: December 06, 2012
  • DOI: 10.1371/journal.ppat.1003037

About the Authors

Robin A. Ohm, Kerrie W. Barry, Alex C. Copeland, Kurt LaButti, Erika A. Lindquist, Susan Lucas, Asaf A. Salamov, Igor V. Grigoriev
United States Department of Energy (DOE) Joint Genome Institute (JGI), Walnut Creek, California, United States of America
Nicolas Feau, Braham Dhillon, Richard C. Hamelin
Faculty of Forestry, Forest Sciences Centre, University of British Columbia, Vancouver, British Columbia, Canada
Bernard Henrissat
Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, CNRS, Marseille, France
Conrad L. Schoch
NIH/NLM/NCBI, Bethesda, Maryland, United States of America
Benjamin A. Horwitz, Idit Kosti
Department of Biology, Technion - IIT, Haifa, Israel
Bradford J. Condon, B. Gillian Turgeon
Department of Plant Pathology & Plant-Microbe Biology, Cornell University, Ithaca, New York, United States of America
Fabian Glaser
Bioinformatics Knowledge Unit, Technion - IIT, Haifa, Israel
Cedar N. Hesse, Lynda Ciuffetti, Joseph W. Spatafora
Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America
Rosie E. Bradshaw
Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand
Richard C. Hamelin
Natural Resources Canada, Ste-Foy, Quebec, Canada
Gert H. J. Kema
Plant Research International, Wageningen, The Netherlands
Christopher Lawrence
Virginia Bioinformatics Institute & Department of Biological Sciences, Blacksburg, Virginia, United States of America
James A. Scott
Division of Occupational & Environmental Health, Dalla Lana School of Public Health, University of Toronto, Toronto, Canada
Pierre J. G. M. de Wit
Laboratory of Phytopathology, Wageningen University, Wageningen, The Netherlands
Shaobin Zhong
Department of Plant Pathology, North Dakota State University, Fargo, North Dakota, United States of America
Stephen B. Goodwin
United States Department of Agriculture, Agricultural Research Service, Purdue University, West Lafayette, Indiana, United States of America

Corresponding Authors

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: RAO REB LC SBG IVG RCH GHJK CL JAS JWS BGT PJGMDW SZ. Performed the experiments: RAO REB BJC BD NF FG BH BAH IK AAS CLS BGT CNH. Analyzed the data: RAO REB BJC BD NF FG BH BAH IK AAS CLS BGT ACC KL EAL. Contributed reagents/materials/analysis tools: KWB SL. Wrote the paper: RAO REB NF SBG IVG BH BAH CLS BGT ACC. Sequenced and assembled genome(s) and/or ESTs: KWB ACC BD CNH KL EAL SL. Annotated genome(s): CNH RAO.